Year-End Audit and Cost Report Planning, Preparation Tips


The few months after a facilities fiscal year end are always challenging. From closing the books, to preparing for the external audit process, to providing information for and completing the Medicare cost report, there is never enough time in the day to get everything done. We have all been through the experience– at the time we have all said “next year will be better” and “we will fix the bottlenecks”.

Whether or not your facility has had success or not making progress in this area, the items below serve as a checklist of ways to plan, prioritize, and complete items throughout the year and before the audit. The goal is to make the year-end process easier for staff, more efficient for auditors and cost report preparers, and make your facility less prone to large audit adjustments and/or make costly mistakes in reimbursement.


Month End Close & Financial Statements

One of the best ways to avoid bottlenecks at year-end is to review your monthly close and financial statement preparation process. If not monthly, at least quarterly, a facility should reconcile all material balance sheet items back to a supporting schedule. Ideally, try to complete your monthly reconciliation schedule in the auditor’s preferred format so you avoid having to take your reconciliations and input them into the auditors’ format at year end.

Facilities should also prepare a Medicare and Medicaid interim cost report template at least quarterly. This will help a facility manage cash flow throughout the year by requesting Medicare interim rate changes and settlements as needed and avoid large auditor adjusting journal entries.

Another material estimate is the accounts receivable allowance for contractuals and doubtful accounts. This schedule should be reviewed in detail and throughout the year and the contractual allowance and doubtful accounts percentages from payors should be estimated and updated as needed.

Managing your close process monthly will enable your staff to complete the needed reconciliations and financial statements. Are the monthly board meetings being held at the appropriate time and/or day of the month? How long does it take to close accounts receivable, payroll, and accounts payable? Do we have a month end close schedule created that includes the closing schedule and gives the accounting staff time to prepare financial statements? Management should have at least three or four business days to review the prepared financials before presenting them at the monthly board meeting. This allows management to ask questions upon review and gives staff the time to make corrections as needed.


External Financial Statement Audit and Cost Report Process

If your facility has followed the recommendations for the monthly close and financial statement process, the external audit preparation time hopefully will already be reduced. However, gathering other information for the audit and for the Medicare cost report can still be overwhelming. Other recommendations to prioritize work and time during the external audit and Medicare cost report process include:

  1. Upon receiving the request for information from the auditor, meet with staff to identify responsibilities and due dates.
  2. Organize, review and send non-financial information as soon as you can after year-end close. This information should not change after the end of the fiscal year so there is no reason to wait to pull this information together as time permits. This includes:
    • Monthly statistical reports
    • Board of Director Meeting Minutes
    • Accounts Receivable Reports
    • Payroll Reports
    • Chargemaster and Revenue Usage Reports
    • Internal control checklists
    • Charity Care information
    • New or amended contracts, debt agreements, capital lease contracts, etc.
    • Medicare and Medicaid Correspondence received throughout the year
    • Medicare cost report statistics and information
      1. Statistics, including observation hours, rural health clinic visits, and 96-hour compliance log for critical access hospitals
      2. Payroll information and FTE’s
      3. B-1 Square Footage Summary with detail support including updates for changes during the fiscal year
      4. A-8-3 Contracted Therapy Invoices and Information
      5. Emergency Room Time Studies
      6. Rural Health Clinic Time Studies
      7. Rural Health Clinic Vaccine information and invoices
      8. Any other B Series allocation statistics that will not change such as:
        • Laundry pounds
        • Dietary Meals
        • Housekeeping Time Study


As you can see, if you are able to complete the list above well in advance of the scheduled audit date, it should help reduce stress and bottlenecks, allowing staff to focus on finalizing the correct year-end trial balance. If you are able to put the time in to review research and correct accounts as needed, you can put the facility in a better position to reduce any surprise auditor adjusting journal entries that can have a material impact to your bottom line and cash flow.


julianne kipple




Julianne Kipple is a Healthcare Director at Lutz with over 10 years of professional experience in the healthcare industry. Her expertise is in accounting and consulting services for healthcare facilities, including outsourced CFO services, Medicare and Medicaid reimbursement, and Medicaid Disproportionate Share Surveys (DSH).

  • Healthcare Financial Management Association, Member
  • American Institute of Certified Public Accountants, Member
  • Nebraska Society of Certified Public Accountants, Member
  • Certified Revenue Cycle Representative
  • Certified Public Accountant
  • Certified Healthcare Financial Professional
  • BSBA in Accounting, with high distinction, Creighton University, Omaha, NE
  • MBA, Creighton University, Omaha, NE


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